nf-core/fastqrepair
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
corruptiondata-cleaningdata-recoveryfastqfastq-corruptedfastq-formatreads-interleavingrecovery-toolunpaired-readswell-formed
Version history
What’s Changed
- [PR #32] - Template update for nf-core/tools v4.0.3 (supersedes the pending v3.4.1, v3.5.1 and v4.0.2 template merges).
- Issue #17 - Improved nextflow_schema.json setting a minimum of 1 split to num_splits and removing a regex
- Template update for
nf-core/toolsv4.0.3. Minimum Nextflow version raised to25.10.4; nf-schema bumped to2.5.1; MultiQC bumped to1.34 - FASTQREPAIR now takes multiqc_config, multiqc_logo, multiqc_methods_description and outdir as explicit workflow inputs, and collates software versions through the versions channel topic
- bump version to 1.1.0dev by @mazzalab in https://github.com/nf-core/fastqrepair/pull/16
- Json schema improvements by @ShimiraOleg in https://github.com/nf-core/fastqrepair/pull/18
- Important! Template update for nf-core/tools v3.3.2 by @nf-core-bot in https://github.com/nf-core/fastqrepair/pull/22
- Update CHANGELOG.md and nextflow_schema.json by @mazzalab in https://github.com/nf-core/fastqrepair/pull/25
- Remove vulnerable PR-comment artifact pattern by @mashehu in https://github.com/nf-core/fastqrepair/pull/30
- Template update for nf-core/tools v4.0.3 by @mazzalab in https://github.com/nf-core/fastqrepair/pull/31
- Important! Template update for nf-core/tools v3.4.1 by @nf-core-bot in https://github.com/nf-core/fastqrepair/pull/26
- Important! Template update for nf-core/tools v3.5.1 by @nf-core-bot in https://github.com/nf-core/fastqrepair/pull/27
- Important! Template update for nf-core/tools v4.0.2 by @nf-core-bot in https://github.com/nf-core/fastqrepair/pull/28
- Important! Template update for nf-core/tools v4.0.3 by @nf-core-bot in https://github.com/nf-core/fastqrepair/pull/29
- Update CHANGELOG.md by @mazzalab in https://github.com/nf-core/fastqrepair/pull/54
- Latest Template update by @mazzalab in https://github.com/nf-core/fastqrepair/pull/32
New Contributors
- @ShimiraOleg made their first contribution in https://github.com/nf-core/fastqrepair/pull/18
- @mashehu made their first contribution in https://github.com/nf-core/fastqrepair/pull/30
Full Changelog: https://github.com/nf-core/fastqrepair/compare/1.0.0...1.1.1
Initial release of nf-core/fastqrepair! 🎉
- Updates of markdown files and default values in schema by @mazzalab in https://github.com/nf-core/fastqrepair/pull/1
- Important! Template update for nf-core/tools v3.1.0 by @mazzalab in https://github.com/nf-core/fastqrepair/pull/10
- Important! Template update for nf-core/tools v3.1.1 by @mirpedrol in https://github.com/nf-core/fastqrepair/pull/13
- Important! Template update for nf-core/tools v3.1.2 by @nf-core-bot in https://github.com/nf-core/fastqrepair/pull/14
- Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in https://github.com/nf-core/fastqrepair/pull/15
- FASTQREPAIR first release by @mazzalab in https://github.com/nf-core/fastqrepair/pull/2
New Contributors
- @mazzalab made their first contribution in https://github.com/nf-core/fastqrepair/pull/1
- @mirpedrol made their first contribution in https://github.com/nf-core/fastqrepair/pull/13
- @nf-core-bot made their first contribution in https://github.com/nf-core/fastqrepair/pull/14
Full Changelog: https://github.com/nf-core/fastqrepair/commits/1.0.0
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